Permission bug after Upgrade

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I recently updated my Fedora 26 system using the command sudo dnf update. After updating ~ 721 packages and rebooting, I faced different problem.

• After logging, my window manager (i3wm) takes a very long time to launch.
  • The network applet doesn't work anymore, it is running, but nothing happens when i'm clicking on it.
  • I can't access alsamixer through the console, it returns says "Permission denied"
  • In nm-applet, can't disconnect from wlan0, I got "org.freedesktop.NetworkManager.network-control request failed: not authorized"

It seems the update messed up with my user permissions of hardware.

The command ls /dev/snd/ returns

drwxr-xr-x  2 root root       60 29 mai   15:18 by-id
drwxr-xr-x  2 root root       80 29 mai   15:18 by-path
crw-rw----+ 1 root audio 116,  2 28 mai   15:13 controlC0
crw-rw----  1 root audio 116, 12 29 mai   15:18 controlC1
crw-rw----+ 1 root audio 116, 10 28 mai   15:13 hwC0D0
crw-rw----+ 1 root audio 116, 11 28 mai   15:13 hwC0D2
crw-rw----+ 1 root audio 116,  4 28 mai   15:13 pcmC0D0c
crw-rw----+ 1 root audio 116,  3 28 mai   15:13 pcmC0D0p
crw-rw----+ 1 root audio 116,  5 28 mai   15:13 pcmC0D3p
crw-rw----+ 1 root audio 116,  6 28 mai   15:13 pcmC0D7p
crw-rw----+ 1 root audio 116,  7 28 mai   15:13 pcmC0D8p
crw-rw----+ 1 root audio 116,  8 28 mai   15:13 pcmC0D9p
crw-rw----+ 1 root audio 116,  9 28 mai   15:13 pcmC0D10p
crw-rw----  1 root audio 116, 14 29 mai   15:18 pcmC1D0c
crw-rw----  1 root audio 116, 13 29 mai   15:18 pcmC1D0p
crw-rw----  1 root audio 116, 15 29 mai   15:18 pcmC1D1p
crw-rw----+ 1 root audio 116,  1 28 mai   15:12 seq
crw-rw----+ 1 root audio 116, 33 28 mai   15:12 timer

I tried to rollback to the previous version of fedora using dnf, but I obtain the error :

No package GeoIP-GeoLite-data-0:2018.01-1.fc26.noarch available.
Error : A transaction cannot be undone

But running locate GeoIP-GeoLite-data gives

$ locate GeoIP-GeoLite-data
/var/cache/PackageKit/26/metadata/updates/packages/GeoIP-GeoLite-data-2018.01-1.fc26.noarch.rpm
/var/cache/PackageKit/26/metadata/updates/packages/GeoIP-GeoLite-data-2018.04-1.fc26.noarch.rpm
/var/cache/PackageKit/28/metadata/fedora/packages/GeoIP-GeoLite-data-2018.04-1.fc28.noarch.rpm

How can I fix this permissions issue ?