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As far as I know, your two best options are reinstalling and choosing the partitions as you wish or editing /etc/fstab to mount the SSD every time you boot. This will mount it in the place you choose and essentially just act like another separate drive.

Here is a guide to messing around with /etc/fstab:

I would just go ahead and reinstall. Cleans up the system and also makes it a lot easier.