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Do you have the proprietary fglrx drivers installed as well? Sounds a lot like what happened when I upgraded to F16. I removed the proprietary fglrx drivers that I had installed on F15 and it booted up just fine. To uninstall

# /usr/share/ati/amd-uninstall.sh

The very presence of that script on your system means that the ati proprietary drivers are installed and if it exists on your system and you haven't installed those drivers after upgrading to F16, you should run that script.