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I reckon the simplest way here would be to do a fresh install. I hope you have a separate /home partition which would make things a lot easier. Extracting rpms and placing files in paths and all of that is mind numbingly tedious, and even if you do do it all correctly, there may be missing bits later.

As a rule, do not mix dnf packages and other package managers such as pip. Always use a virtual environment with pip and limit this to the local user only. There is almost no use case where you'd want to run pip with sudo priviliges to install these packages system wide.