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Running check I got

patrickm@thinkpadx230:/$ sudo dnf check
authselect-1.0.2-2.fc29.x86_64 is a duplicate with authselect-1.0.3-1.fc29.x86_64
authselect-compat-1.0.2-2.fc29.x86_64 is a duplicate with authselect-compat-1.0.3-1.fc29.x86_64
authselect-libs-1.0.2-2.fc29.x86_64 is a duplicate with authselect-libs-1.0.3-1.fc29.x86_64
autocorr-en-1:6.1.5.2-2.fc29.noarch is a duplicate with autocorr-en-1:6.1.5.2-4.fc29.noarch
blivet-data-1:3.1.2-1.fc29.noarch is a duplicate with blivet-data-1:3.1.2-4.fc29.noarch
clang-7.0.1-4.fc29.x86_64 is a duplicate with clang-7.0.1-6.fc29.x86_64
clang-libs-7.0.1-4.fc29.x86_64 is a duplicate with clang-libs-7.0.1-6.fc29.x86_64
colord-1.4.3-2.fc29.x86_64 is a duplicate with colord-1.4.4-1.fc29.x86_64
colord-libs-1.4.3-2.fc29.i686 is a duplicate with colord-libs-1.4.3-2.fc29.x86_64
colord-libs-1.4.3-2.fc29.i686 is a duplicate with colord-libs-1.4.4-1.fc29.x86_64
createrepo_c-libs-0.12.1-1.fc29.x86_64 is a duplicate with createrepo_c-libs-0.12.2-1.fc29.x86_64
cronie-1.5.2-3.fc29.x86_64 is a duplicate with cronie-1.5.4-1.fc29.x86_64
cronie-anacron-1.5.2-3.fc29.x86_64 is a duplicate with cronie-anacron-1.5.4-1.fc29.x86_64
dnf-4.1.0-1.fc29.noarch is a duplicate with dnf-4.2.2-1.fc29.noarch
dnf-4.2.2-1.fc29.noarch has installed conflict "python3-dnf-plugins-core < 4.0.6": python3-dnf-plugins-core-4.0.4-1.fc29.noarch
dnf-data-4.1.0-1.fc29.noarch is a duplicate with dnf-data-4.2.2-1.fc29.noarch
dnf-plugins-core-4.0.4-1.fc29.noarch is a duplicate with dnf-plugins-core-4.0.6-1.fc29.noarch
dnf-yum-4.1.0-1.fc29.noarch is a duplicate with dnf-yum-4.2.2-1.fc29.noarch
dracut-049-25.git20181204.fc29.x86_64 is a duplicate with dracut-049-26.git20181204.fc29.x86_64
dracut-live-049-25.git20181204.fc29.x86_64 is a duplicate with dracut-live-049-26.git20181204.fc29.x86_64
dracut-network-049-25.git20181204.fc29.x86_64 is a duplicate with dracut-network-049-26.git20181204.fc29.x86_64
fedora-gpg-keys-29-3.noarch is a duplicate with fedora-gpg-keys-29-5.noarch
fedora-repos-29-3.noarch is a duplicate with fedora-repos-29-5.noarch
ffmpeg-libs-4.0.3-3.fc29.x86_64 is a duplicate with ffmpeg-libs-4.0.4-1.fc29.x86_64
fuse-2.9.7-14.fc29.x86_64 is a duplicate with fuse-2.9.9-1.fc29.x86_64
fuse-common-3.2.3-14.fc29.x86_64 is a duplicate with fuse-common-3.4.2-1.fc29.x86_64
fuse-libs-2.9.7-14.fc29.x86_64 is a duplicate with fuse-libs-2.9.9-1.fc29.x86_64
ghostscript-9.26-1.fc29.x86_64 is a duplicate with ghostscript-9.26-4.fc29.x86_64
gnutls-3.6.6-1.fc29.i686 is a duplicate with gnutls-3.6.6-1.fc29.x86_64
gnutls-3.6.6-1.fc29.i686 is a duplicate with gnutls-3.6.7-1.fc29.x86_64
gstreamer1-plugin-openh264-1.14.2-1.fc29.x86_64 is a duplicate with gstreamer1-plugin-openh264-1.14.4-1.fc29.x86_64
gstreamer1-plugins-good-1.14.4-1.fc29.x86_64 is a duplicate with gstreamer1-plugins-good-1.14.4-2.fc29.x86_64
gstreamer1-plugins-good-extras-1.14.4-1.fc29.x86_64 is a duplicate with gstreamer1-plugins-good-extras-1.14.4-2.fc29.x86_64
gstreamer1-plugins-good-gtk-1.14.4-1.fc29.x86_64 is a duplicate with gstreamer1-plugins-good-gtk-1.14.4-2.fc29.x86_64
gzip-1.9-7.fc29.x86_64 is a duplicate with gzip-1.9-9.fc29.x86_64
hplip-3.18.12-4.fc29.x86_64 is a duplicate with hplip-3.18.12-6.fc29.x86_64
hplip-common-3.18.12-4.fc29.x86_64 is a duplicate with hplip-common-3.18.12-6.fc29.x86_64
hplip-libs-3.18.12-4.fc29.x86_64 is a duplicate with hplip-libs-3.18.12-6.fc29.x86_64
hwdata-0.320-1.fc29.noarch is a duplicate with hwdata-0.321-1.fc29.noarch
ibus-typing-booster-2.5.3-1.fc29.noarch is a duplicate with ibus-typing-booster-2.6.0-1.fc29.noarch
kyotocabinet-libs-1.2.76-18.fc29.x86_64 is a duplicate with kyotocabinet-libs-1.2.77-1.fc29.x86_64
libarchive-3.3.3-2.fc29.x86_64 is a duplicate with libarchive-3.3.3-6.fc29.x86_64
libavdevice-4.0.3-3.fc29.x86_64 is a duplicate with libavdevice-4.0.4-1.fc29.x86_64
libcomps-0.1.10-2.fc29.x86_64 is a duplicate with libcomps-0.1.11-1.fc29.x86_64
libdnf-0.26.0-1.fc29.x86_64 is a duplicate with libdnf-0.28.1-1.fc29.x86_64
libgs-9.26-1.fc29.x86_64 is a duplicate with libgs-9.26-4.fc29.x86_64
libpinyin-2.2.2-1.fc29.x86_64 is a duplicate with libpinyin-2.3.0-1.fc29.x86_64
libpinyin-data-2.2.2-1.fc29.x86_64 is a duplicate with libpinyin-data-2.3.0-1.fc29.x86_64
libreoffice-calc-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-calc-1:6.1.5.2-4.fc29.x86_64
libreoffice-core-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-core-1:6.1.5.2-4.fc29.x86_64
libreoffice-data-1:6.1.5.2-2.fc29.noarch is a duplicate with libreoffice-data-1:6.1.5.2-4.fc29.noarch
libreoffice-draw-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-draw-1:6.1.5.2-4.fc29.x86_64
libreoffice-emailmerge-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-emailmerge-1:6.1.5.2-4.fc29.x86_64
libreoffice-filters-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-filters-1:6.1.5.2-4.fc29.x86_64
libreoffice-graphicfilter-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-graphicfilter-1:6.1.5.2-4.fc29.x86_64
libreoffice-gtk2-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-gtk2-1:6.1.5.2-4.fc29.x86_64
libreoffice-gtk3-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-gtk3-1:6.1.5.2-4.fc29.x86_64
libreoffice-help-en-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-help-en-1:6.1.5.2-4.fc29.x86_64
libreoffice-impress-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-impress-1:6.1.5.2-4.fc29.x86_64
libreoffice-langpack-en-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-langpack-en-1:6.1.5.2-4.fc29.x86_64
libreoffice-math-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-math-1:6.1.5.2-4.fc29.x86_64
libreoffice-opensymbol-fonts-1:6.1.5.2-2.fc29.noarch is a duplicate with libreoffice-opensymbol-fonts-1:6.1.5.2-4.fc29.noarch
libreoffice-pdfimport-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-pdfimport-1:6.1.5.2-4.fc29.x86_64
libreoffice-pyuno-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-pyuno-1:6.1.5.2-4.fc29.x86_64
libreoffice-ure-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-ure-1:6.1.5.2-4.fc29.x86_64
libreoffice-ure-common-1:6.1.5.2-2.fc29.noarch is a duplicate with libreoffice-ure-common-1:6.1.5.2-4.fc29.noarch
libreoffice-writer-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-writer-1:6.1.5.2-4.fc29.x86_64
libreoffice-x11-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-x11-1:6.1.5.2-4.fc29.x86_64
libreoffice-xsltfilter-1:6.1.5.2-2.fc29.x86_64 is a duplicate with libreoffice-xsltfilter-1:6.1.5.2-4.fc29.x86_64
librepo-1.9.4-1.fc29.x86_64 is a duplicate with librepo-1.9.6-1.fc29.x86_64
libsane-hpaio-3.18.12-4.fc29.x86_64 is a duplicate with libsane-hpaio-3.18.12-6.fc29.x86_64
libsolv-0.7.2-2.fc29.x86_64 is a duplicate with libsolv-0.7.4-1.fc29.x86_64
libudisks2-2.8.1-1.fc29.x86_64 is a duplicate with libudisks2-2.8.2-1.fc29.x86_64
libwinpr-2:2.0.0-48.20190228gitce386c8.fc29.x86_64 is a duplicate with libwinpr-2:2.0.0-49.20190304git435872b.fc29.x86_64
libxcrypt-4.4.3-10.fc29.i686 is a duplicate with libxcrypt-4.4.3-10.fc29.x86_64
libxcrypt-4.4.3-10.fc29.i686 is a duplicate with libxcrypt-4.4.4-2.fc29.x86_64
llvm-libs-7.0.1-3.fc29.i686 is a duplicate with llvm-libs-7.0.1-3.fc29.x86_64
llvm-libs-7.0.1-3.fc29.i686 is a duplicate with llvm-libs-7.0.1-4.fc29.i686
llvm-libs-7.0.1-3.fc29.i686 is a duplicate with llvm-libs-7.0.1-4.fc29.x86_64
mesa-dri-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-dri-drivers-18.3.4-1.fc29.x86_64
mesa-dri-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-dri-drivers-18.3.5-2.fc29.i686
mesa-dri-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-dri-drivers-18.3.5-2.fc29.x86_64
mesa-filesystem-18.3.4-1.fc29.i686 is a duplicate with mesa-filesystem-18.3.4-1.fc29.x86_64
mesa-filesystem-18.3.4-1.fc29.i686 is a duplicate with mesa-filesystem-18.3.5-2.fc29.i686
mesa-filesystem-18.3.4-1.fc29.i686 is a duplicate with mesa-filesystem-18.3.5-2.fc29.x86_64
mesa-libGL-18.3.4-1.fc29.i686 is a duplicate with mesa-libGL-18.3.4-1.fc29.x86_64
mesa-libGL-18.3.4-1.fc29.i686 is a duplicate with mesa-libGL-18.3.5-2.fc29.i686
mesa-libgbm-18.3.4-1.fc29.i686 is a duplicate with mesa-libgbm-18.3.4-1.fc29.x86_64
mesa-libgbm-18.3.4-1.fc29.i686 is a duplicate with mesa-libgbm-18.3.5-2.fc29.i686
mesa-libgbm-18.3.4-1.fc29.i686 is a duplicate with mesa-libgbm-18.3.5-2.fc29.x86_64
mesa-libglapi-18.3.4-1.fc29.i686 is a duplicate with mesa-libglapi-18.3.4-1.fc29.x86_64
mesa-libglapi-18.3.4-1.fc29.i686 is a duplicate with mesa-libglapi-18.3.5-2.fc29.i686
mesa-libglapi-18.3.4-1.fc29.i686 is a duplicate with mesa-libglapi-18.3.5-2.fc29.x86_64
mesa-vulkan-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-vulkan-drivers-18.3.4-1.fc29.x86_64
mesa-vulkan-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-vulkan-drivers-18.3.5-2.fc29.i686
mesa-vulkan-drivers-18.3.4-1.fc29.i686 is a duplicate with mesa-vulkan-drivers-18.3.5-2.fc29.x86_64
mozilla-openh264-1.8.0-2.fc29.x86_64 is a duplicate with mozilla-openh264-1.8.0-3.fc29.x86_64
nspr-4.20.0-1.fc29.i686 is a duplicate with nspr-4.20.0-1.fc29.x86_64
nspr-4.20.0-1.fc29.i686 is a duplicate with nspr-4.21.0-1.fc29.i686
nspr-4.20.0-1.fc29.i686 is a duplicate with nspr-4.21.0-1.fc29.x86_64
nss-3.42.1-1.fc29.i686 is a duplicate with nss-3.42.1-1.fc29.x86_64
nss-3.42.1-1.fc29.i686 is a duplicate with nss-3.43.0-1.fc29.i686
nss-3.42.1-1.fc29.i686 is a duplicate with nss-3.43.0-1.fc29.x86_64
nss-softokn-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-3.42.1-1.fc29.x86_64
nss-softokn-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-3.43.0-1.fc29.i686
nss-softokn-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-3.43.0-1.fc29.x86_64
nss-softokn-freebl-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-freebl-3.42.1-1.fc29.x86_64
nss-softokn-freebl-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-freebl-3.43.0-1.fc29.i686
nss-softokn-freebl-3.42.1-1.fc29.i686 is a duplicate with nss-softokn-freebl-3.43.0-1.fc29.x86_64
nss-sysinit-3.42.1-1.fc29.x86_64 is a duplicate with nss-sysinit-3.43.0-1.fc29.x86_64
nss-util-3.42.1-1.fc29.i686 is a duplicate with nss-util-3.42.1-1.fc29.x86_64
nss-util-3.42.1-1.fc29.i686 is a duplicate with nss-util-3.43.0-1.fc29.i686
nss-util-3.42.1-1.fc29.i686 is a duplicate with nss-util-3.43.0-1.fc29.x86_64
ntfs-3g-2:2017.3.23-8.fc29.x86_64 is a duplicate with ntfs-3g-2:2017.3.23-10.fc29.x86_64
ntfsprogs-2:2017.3.23-8.fc29.x86_64 is a duplicate with ntfsprogs-2:2017.3.23-10.fc29.x86_64
open-vm-tools-10.3.5-2.fc29.x86_64 is a duplicate with open-vm-tools-10.3.10-1.fc29.x86_64
open-vm-tools-desktop-10.3.5-2.fc29.x86_64 is a duplicate with open-vm-tools-desktop-10.3.10-1.fc29.x86_64
openh264-1.8.0-2.fc29.x86_64 is a duplicate with openh264-1.8.0-3.fc29.x86_64
openldap-2.4.46-9.fc29.i686 is a duplicate with openldap-2.4.46-10.fc29.x86_64
openldap-2.4.46-9.fc29.i686 is a duplicate with openldap-2.4.46-9.fc29.x86_64
openssl-libs-1:1.1.1b-2.fc29.i686 is a duplicate with openssl-libs-1:1.1.1b-2.fc29.x86_64
openssl-libs-1:1.1.1b-2.fc29.i686 is a duplicate with openssl-libs-1:1.1.1b-3.fc29.i686
openssl-libs-1:1.1.1b-2.fc29.i686 is a duplicate with openssl-libs-1:1.1.1b-3.fc29.x86_64
osinfo-db-20190218-1.fc29.noarch is a duplicate with osinfo-db-20190304-1.fc29.noarch
polkit-libs-0.115-4.3.fc29.x86_64 is a duplicate with polkit-libs-0.115-4.4.fc29.x86_64
python-setuptools-wheel-40.4.3-1.fc29.noarch is a duplicate with python-setuptools-wheel-40.8.0-1.fc29.noarch
python3-3.7.2-4.fc29.x86_64 is a duplicate with python3-3.7.2-5.fc29.x86_64
python3-blivet-1:3.1.2-1.fc29.noarch is a duplicate with python3-blivet-1:3.1.2-4.fc29.noarch
python3-dnf-4.1.0-1.fc29.noarch is a duplicate with python3-dnf-4.2.2-1.fc29.noarch
python3-dnf-plugin-system-upgrade-4.0.2-1.fc29.noarch is a duplicate with python3-dnf-plugin-system-upgrade-4.0.4-1.fc29.noarch
python3-dnf-plugins-core-4.0.4-1.fc29.noarch is a duplicate with python3-dnf-plugins-core-4.0.6-1.fc29.noarch
python3-dnf-plugins-extras-common-4.0.2-1.fc29.noarch is a duplicate with python3-dnf-plugins-extras-common-4.0.4-1.fc29.noarch
python3-dnf-plugins-extras-common-4.0.2-1.fc29.noarch is obsoleted by python3-dnf-plugins-extras-common-4.0.4-1.fc29.noarch
python3-hawkey-0.26.0-1.fc29.x86_64 is a duplicate with python3-hawkey-0.28.1-1.fc29.x86_64
python3-libcomps-0.1.10-2.fc29.x86_64 is a duplicate with python3-libcomps-0.1.11-1.fc29.x86_64
python3-libdnf-0.26.0-1.fc29.x86_64 is a duplicate with python3-libdnf-0.28.1-1.fc29.x86_64
python3-libs-3.7.2-4.fc29.x86_64 is a duplicate with python3-libs-3.7.2-5.fc29.x86_64
python3-pid-2.1.1-9.fc29.noarch is a duplicate with python3-pid-2.2.3-1.fc29.noarch
python3-productmd-1.19-1.fc29.noarch is a duplicate with python3-productmd-1.21-1.fc29.noarch
python3-pyyaml-4.2-0.1.b4.fc29.x86_64 is a duplicate with python3-pyyaml-5.1-1.fc29.x86_64
python3-setuptools-40.4.3-1.fc29.noarch is a duplicate with python3-setuptools-40.8.0-1.fc29.noarch
qt-1:4.8.7-44.fc29.x86_64 is a duplicate with qt-1:4.8.7-45.fc29.x86_64
qt-common-1:4.8.7-44.fc29.noarch is a duplicate with qt-common-1:4.8.7-45.fc29.noarch
selinux-policy-3.14.2-49.fc29.noarch is a duplicate with selinux-policy-3.14.2-51.fc29.noarch
selinux-policy-targeted-3.14.2-49.fc29.noarch is a duplicate with selinux-policy-targeted-3.14.2-51.fc29.noarch
steam-1.0.0.59-7.fc29.i686 is a duplicate with steam-1.0.0.59-9.fc29.i686
tlp-1.1-2.fc29.noarch is a duplicate with tlp-1.2.1-1.fc29.noarch
tlp-rdw-1.1-2.fc29.noarch is a duplicate with tlp-rdw-1.2.1-1.fc29.noarch
udisks2-2.8.1-1.fc29.x86_64 is a duplicate with udisks2-2.8.2-1.fc29.x86_64
udisks2-iscsi-2.8.1-1.fc29.x86_64 is a duplicate with udisks2-iscsi-2.8.2-1.fc29.x86_64
unicode-ucd-11.0.0-2.fc29.noarch is a duplicate with unicode-ucd-12.0.0-1.fc29.noarch
vim-minimal-2:8.1.994-1.fc29.x86_64 is a duplicate with vim-minimal-2:8.1.998-1.fc29.x86_64
webkit2gtk3-jsc-2.22.6-1.fc29.x86_64 is a duplicate with webkit2gtk3-jsc-2.22.7-1.fc29.x86_64
webkit2gtk3-plugin-process-gtk2-2.22.6-1.fc29.x86_64 is a duplicate with webkit2gtk3-plugin-process-gtk2-2.22.7-1.fc29.x86_64
xen-libs-4.11.1-1.fc29.x86_64 is a duplicate with xen-libs-4.11.1-4.fc29.x86_64
xen-licenses-4.11.1-1.fc29.x86_64 is a duplicate with xen-licenses-4.11.1-4.fc29.x86_64
xxhash-libs-0.6.5-2.fc29.x86_64 is a duplicate with xxhash-libs-0.7.0-1.fc29.x86_64
zchunk-libs-1.0.3-1.fc29.x86_64 is a duplicate with zchunk-libs-1.0.4-1.fc29.x86_64
Error: Check discovered 158 problem(s)

So these are not the only duplicates, but there are 158 of them I will just wait for fedora 30 e reinstall the system